Yuan Ji

  1. Ji YB, Chen WJ, Shan TZ, Sun BY, Yan PC, Jiang W. Antibacterial Diphenyl Ether, Benzophenone and Xanthone Derivatives from Aspergillus flavipes. Chem Biodivers. 2019 Dec 05. View in: PubMed

  2. Yeh AC, Li H, Zhu Y, Zhang J, Khramtsova G, Drukker K, Edwards A, McGregor S, Yoshimatsu T, Zheng Y, Niu Q, Abe H, Mueller J, Conzen S, Ji Y, Giger ML, Olopade OI. Radiogenomics of breast cancer using dynamic contrast enhanced MRI and gene expression profiling. Cancer Imaging. 2019 Jul 15; 19(1):48. View in: PubMed

  3. Liu M, Wang SJ, Ji Y. The i3+3 design for phase I clinical trials. J Biopharm Stat. 2019 Jul 15; 1-11. View in: PubMed

  4. Yang Y, Xu W, Peng D, Wang H, Zhang X, Wang H, Xiao F, Zhu Y, Ji Y, Gulukota K, Helseth DL, Mangold KA, Sullivan M, Kaul K, Wang E, Prabhakar BS, Li J, Wu X, Wang L, Seth P. An Oncolytic Adenovirus Targeting Transforming Growth Factor ß Inhibits Protumorigenic Signals and Produces Immune Activation: A Novel Approach to Enhance Anti-PD-1 and Anti-CTLA-4 Therapy. Hum Gene Ther. 2019 09; 30(9):1117-1132. View in: PubMed

  5. Guo W, Ji Y, Li D. R-TPI: rolling toxicity probability interval design to shorten the duration and maintain safety of phase I trials. J Biopharm Stat. 2019; 29(3):411-424. View in: PubMed

  6. Zhu Y, Mohamed ASR, Lai SY, Yang S, Kanwar A, Wei L, Kamal M, Sengupta S, Elhalawani H, Skinner H, Mackin DS, Shiao J, Messer J, Wong A, Ding Y, Zhang L, Court L, Ji Y, Fuller CD. Imaging-Genomic Study of Head and Neck Squamous Cell Carcinoma: Associations Between Radiomic Phenotypes and Genomic Mechanisms via Integration of The Cancer Genome Atlas and The Cancer Imaging Archive. JCO Clin Cancer Inform. 2019 02; 3:1-9. View in: PubMed

  7. Shen X, Wu D, Tang M, Sun H, Ji Y, Huang C, Zeng M. Liver computed tomographic perfusion for monitoring the early therapeutic response to sorafenib in advanced hepatocellular carcinoma patients. J Cancer Res Ther. 2018; 14(7):1556-1562. View in: PubMed

  8. Jin K, Wang H, Zeng M, Rao S, Yan L, Ji Y, Fu C, Sheng R. A comparative study of MR extracellular volume fraction measurement and two-dimensional shear-wave elastography in assessment of liver fibrosis with chronic hepatitis B. Abdom Radiol (NY). 2019 04; 44(4):1407-1414. View in: PubMed

  9. Zheng BH, Liu LZ, Zhang ZZ, Shi JY, Dong LQ, Tian LY, Ding ZB, Ji Y, Rao SX, Zhou J, Fan J, Wang XY, Gao Q. Radiomics score: a potential prognostic imaging feature for postoperative survival of solitary HCC patients. BMC Cancer. 2018 Nov 21; 18(1):1148. View in: PubMed

  10. Cheng X, Yu S, Wang Y, Cui Y, Li W, Yu Y, Tang C, Jiang H, Ji Y, Sun Y, Wang X, Shen Z, Liu F, Liu TS. The role of oxaliplatin in the adjuvant setting of different Lauren's type of gastric adenocarcinoma after D2 gastrectomy: a real-world study. Gastric Cancer. 2019 05; 22(3):587-597. View in: PubMed

  11. Zhou J, Sun HC, Wang Z, Cong WM, Wang JH, Zeng MS, Yang JM, Bie P, Liu LX, Wen TF, Han GH, Wang MQ, Liu RB, Lu LG, Ren ZG, Chen MS, Zeng ZC, Liang P, Liang CH, Chen M, Yan FH, Wang WP, Ji Y, Cheng WW, Dai CL, Jia WD, Li YM, Li YX, Liang J, Liu TS, Lv GY, Mao YL, Ren WX, Shi HC, Wang WT, Wang XY, Xing BC, Xu JM, Yang JY, Yang YF, Ye SL, Yin ZY, Zhang BH, Zhang SJ, Zhou WP, Zhu JY, Liu R, Shi YH, Xiao YS, Dai Z, Teng GJ, Cai JQ, Wang WL, Dong JH, Li Q, Shen F, Qin SK, Fan J. Guidelines for Diagnosis and Treatment of Primary Liver Cancer in China (2017 Edition). Liver Cancer. 2018 Sep; 7(3):235-260. View in: PubMed

  12. Chen XX, Yin Y, Cheng JW, Huang A, Hu B, Zhang X, Sun YF, Wang J, Wang YP, Ji Y, Qiu SJ, Fan J, Zhou J, Yang XR. BAP1 acts as a tumor suppressor in intrahepatic cholangiocarcinoma by modulating the ERK1/2 and JNK/c-Jun pathways. Cell Death Dis. 2018 10 10; 9(10):1036. View in: PubMed

  13. Gillard M, Javier R, Ji Y, Zheng SL, Xu J, Brendler CB, Crawford SE, Pierce BL, Griend DJV, Franco OE. Elevation of Stromal-Derived Mediators of Inflammation Promote Prostate Cancer Progression in African-American Men. Cancer Res. 2018 11 01; 78(21):6134-6145. View in: PubMed

  14. Sheng RF, Jin KP, Yang L, Wang HQ, Liu H, Ji Y, Fu CX, Zeng MS. Histogram Analysis of Diffusion Kurtosis Magnetic Resonance Imaging for Diagnosis of Hepatic Fibrosis. Korean J Radiol. 2018 Sep-Oct; 19(5):916-922. View in: PubMed

  15. Xiao Q, Sun Y, Dobi A, Srivastava S, Wang W, Srivastava S, Ji Y, Hou J, Zhao GP, Li Y, Li H. Systematic analysis reveals molecular characteristics of ERG-negative prostate cancer. Sci Rep. 2018 08 27; 8(1):12868. View in: PubMed

  16. Cheng J, Wei D, Ji Y, Chen L, Yang L, Li G, Wu L, Hou T, Xie L, Ding G, Li H, Li Y. Integrative analysis of DNA methylation and gene expression reveals hepatocellular carcinoma-specific diagnostic biomarkers. Genome Med. 2018 05 30; 10(1):42. View in: PubMed

  17. Wang WT, Zhu S, Ding Y, Yang L, Chen CZ, Ye QH, Ji Y, Zeng MS, Rao SX. T1 mapping on gadoxetic acid-enhanced MR imaging predicts recurrence of hepatocellular carcinoma after hepatectomy. Eur J Radiol. 2018 Jun; 103:25-31. View in: PubMed

  18. Ni Y, Müller P, Wei L, Ji Y. Bayesian graphical models for computational network biology. BMC Bioinformatics. 2018 03 21; 19(Suppl 3):63. View in: PubMed

  19. Wang H, Yang C, Rao S, Ji Y, Han J, Sheng R, Zeng M. MR imaging of hepatocellular adenomas on genotype-phenotype classification: A report from China. Eur J Radiol. 2018 Mar; 100:135-141. View in: PubMed

  20. Hu B, Ding GY, Fu PY, Zhu XD, Ji Y, Shi GM, Shen YH, Cai JB, Yang Z, Zhou J, Fan J, Sun HC, Kuang M, Huang C. NOD-like receptor X1 functions as a tumor suppressor by inhibiting epithelial-mesenchymal transition and inducing aging in hepatocellular carcinoma cells. J Hematol Oncol. 2018 02 26; 11(1):28. View in: PubMed

  21. Yang C, Wang H, Tang Y, Rao S, Sheng R, Ji Y, Zeng M. ADC similarity predicts microvascular invasion of bifocal hepatocellular carcinoma. Abdom Radiol (NY). 2018 09; 43(9):2295-2302. View in: PubMed

  22. Sheng RF, Zhai CW, Ji Y, Chen CZ, Yang L, Zeng MS. Role of MR in the differentiation of IgG4-related from non-IgG4-related hepatic inflammatory pseudotumor. Hepatobiliary Pancreat Dis Int. 2017 Dec 15; 16(6):631-637. View in: PubMed

  23. Wei L, Jin Z, Yang S, Xu Y, Zhu Y, Ji Y. TCGA-assembler 2: software pipeline for retrieval and processing of TCGA/CPTAC data. Bioinformatics. 2018 05 01; 34(9):1615-1617. View in: PubMed

  24. Sun X, Wang SC, Wei Y, Luo X, Jia Y, Li L, Gopal P, Zhu M, Nassour I, Chuang JC, Maples T, Celen C, Nguyen LH, Wu L, Fu S, Li W, Hui L, Tian F, Ji Y, Zhang S, Sorouri M, Hwang TH, Letzig L, James L, Wang Z, Yopp AC, Singal AG, Zhu H. Arid1a Has Context-Dependent Oncogenic and Tumor Suppressor Functions in Liver Cancer. Cancer Cell. 2017 11 13; 32(5):574-589.e6. View in: PubMed

  25. Hu C, Li W, Tian F, Jiang K, Liu X, Cen J, He Q, Qiu Z, Kienast Y, Wang Z, Zhang H, Ji Y, Hu J, Hui L. Arid1a regulates response to anti-angiogenic therapy in advanced hepatocellular carcinoma. J Hepatol. 2018 03; 68(3):465-475. View in: PubMed

  26. Sun YF, Guo W, Xu Y, Shi YH, Gong ZJ, Ji Y, Du M, Zhang X, Hu B, Huang A, Chen GG, Lai PBS, Cao Y, Qiu SJ, Zhou J, Yang XR, Fan J. Circulating Tumor Cells from Different Vascular Sites Exhibit Spatial Heterogeneity in Epithelial and Mesenchymal Composition and Distinct Clinical Significance in Hepatocellular Carcinoma. Clin Cancer Res. 2018 02 01; 24(3):547-559. View in: PubMed

  27. Ni Y, Müller P, Zhu Y, Ji Y. Heterogeneous reciprocal graphical models. Biometrics. 2018 06; 74(2):606-615. View in: PubMed

  28. Zuanetti DA, Müller P, Zhu Y, Yang S, Ji Y. Clustering distributions with the marginalized nested Dirichlet process. Biometrics. 2018 06; 74(2):584-594. View in: PubMed

  29. Xu Y, Zhao G, Pu N, Nuerxiati A, Ji Y, Zhang L, Rong Y, Lou W, Wang D, Kuang T, Xu X, Wu W. One Hundred Twenty-One Resected Solid Pseudopapillary Tumors of the Pancreas: An 8-Year Single-Institution Experience at Zhongshan Hospital, Shanghai, China. Pancreas. 2017 09; 46(8):1023-1028. View in: PubMed

  30. Wang ZC, Wang C, Ding Y, Ji Y, Zeng MS, Rao SX. CT volumetry can potentially predict the local stage for gastric cancer after chemotherapy. Diagn Interv Radiol. 2017 Jul-Aug; 23(4):257-262. View in: PubMed

  31. Sheng RF, Wang HQ, Jin KP, Yang L, Liu H, Ji Y, Fu CX, Zeng MS. Histogram analyses of diffusion kurtosis indices and apparent diffusion coefficient in assessing liver regeneration after ALPPS and a comparative study with portal vein ligation. J Magn Reson Imaging. 2018 03; 47(3):729-736. View in: PubMed

  32. Chen T, Ji Y, Yao LQ, Xu MD, Zhou PH. Colonic polypoid mucosa-associated lymphoid tissue lymphoma. Clin Res Hepatol Gastroenterol. 2018 04; 42(2):101-102. View in: PubMed

  33. Manching H, Sengupta S, Hopper KR, Polson SW, Ji Y, Wisser RJ. Phased Genotyping-by-Sequencing Enhances Analysis of Genetic Diversity and Reveals Divergent Copy Number Variants in Maize. G3 (Bethesda). 2017 07 05; 7(7):2161-2170. View in: PubMed

  34. Lee J, Müller P, Sengupta S, Gulukota K, Ji Y. Bayesian inference for intratumour heterogeneity in mutations and copy number variation. J R Stat Soc Ser C Appl Stat. 2016 08; 65(4):547-563. View in: PubMed

  35. Guo W, Wang SJ, Yang S, Lynn H, Ji Y. A Bayesian interval dose-finding design addressingOckham's razor: mTPI-2. Contemp Clin Trials. 2017 07; 58:23-33. View in: PubMed

  36. Huang C, Zhu XD, Ji Y, Ding GY, Shi GM, Shen YH, Zhou J, Fan J, Sun HC. Microvascular invasion has limited clinical values in hepatocellular carcinoma patients at Barcelona Clinic Liver Cancer (BCLC) stages 0 or B. BMC Cancer. 2017 01 17; 17(1):58. View in: PubMed

  37. Chen T, Zhou PH, Chu Y, Zhang YQ, Chen WF, Ji Y, Yao LQ, Xu MD. Long-term Outcomes of Submucosal Tunneling Endoscopic Resection for Upper Gastrointestinal Submucosal Tumors. Ann Surg. 2017 02; 265(2):363-369. View in: PubMed

  38. Narayanan J, Dobrin S, Choi J, Rubin S, Pham A, Patel V, Frigerio R, Maurer D, Gupta P, Link L, Walters S, Wang C, Ji Y, Maraganore DM. Structured clinical documentation in the electronic medical record to improve quality and to support practice-based research in epilepsy. Epilepsia. 2017 01; 58(1):68-76. View in: PubMed

  39. Hu XX, Yang ZX, Liang HY, Ding Y, Grimm R, Fu CX, Liu H, Yan X, Ji Y, Zeng MS, Rao SX. Whole-tumor MRI histogram analyses of hepatocellular carcinoma: Correlations with Ki-67 labeling index. J Magn Reson Imaging. 2017 08; 46(2):383-392. View in: PubMed

  40. Li H, Zhu Y, Burnside ES, Huang E, Drukker K, Hoadley KA, Fan C, Conzen SD, Zuley M, Net JM, Sutton E, Whitman GJ, Morris E, Perou CM, Ji Y, Giger ML. Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set. NPJ Breast Cancer. 2016; 2. View in: PubMed

  41. Yang C, Wang H, Sheng R, Ji Y, Rao S, Zeng M. Microvascular invasion in hepatocellular carcinoma: is it predictable with a new, preoperative application of diffusion-weighted imaging? Clin Imaging. 2017 Jan - Feb; 41:101-105. View in: PubMed

  42. Guo W, Ji Y, Catenacci DVT. A subgroup cluster-based Bayesian adaptive design for precision medicine. Biometrics. 2017 06; 73(2):367-377. View in: PubMed

  43. Li DH, Whitmore JB, Guo W, Ji Y. Toxicity and Efficacy Probability Interval Design for Phase I Adoptive Cell Therapy Dose-Finding Clinical Trials. Clin Cancer Res. 2017 Jan 01; 23(1):13-20. View in: PubMed

  44. Xu Y, Trippa L, Müller P, Ji Y. Subgroup-Based Adaptive (SUBA) Designs for Multi-Arm Biomarker Trials. Stat Biosci. 2016 Jun; 8(1):159-180. View in: PubMed

  45. Li L, Li D, Tian F, Cen J, Chen X, Ji Y, Hui L. Hepatic Loss of Borealin Impairs Postnatal Liver Development, Regeneration, and Hepatocarcinogenesis. J Biol Chem. 2016 Sep 30; 291(40):21137-21147. View in: PubMed

  46. Zhang L, Shao Y, Li L, Tian F, Cen J, Chen X, Hu D, Zhou Y, Xie W, Zheng Y, Ji Y, Liu M, Li D, Hui L. Efficient liver repopulation of transplanted hepatocyte prevents cirrhosis in a rat model of hereditary tyrosinemia type I. Sci Rep. 2016 08 11; 6:31460. View in: PubMed

  47. Lin C, Zhao GC, Xu YD, Wang DS, Jin DY, Ji Y, Lou WH, Wu WC. Increased expression of aTubulin is associated with poor prognosis in patients with pancreatic cancer after surgical resection. Oncotarget. 2016 Sep 13; 7(37):60657-60664. View in: PubMed

  48. Ma Y, Ji Y, You M, Wang S, Dong Y, Jin G, Lin M, Wang Q, Li A, Zhang X, Xu F. Labeling and long-term tracking of bone marrow mesenchymal stem cells in vitro using NaYF4:Yb(3+),Er(3+) upconversion nanoparticles. Acta Biomater. 2016 09 15; 42:199-208. View in: PubMed

  49. Sheng RF, Xie YH, Ji Y, Chen CZ, Yang L, Jin KP, Zeng MS. MR comparative study of combined hepatocellular-cholangiocarcinoma in normal, fibrotic, and cirrhotic livers. Abdom Radiol (NY). 2016 11; 41(11):2102-2114. View in: PubMed

  50. Li D, Fu J, Du M, Zhang H, Li L, Cen J, Li W, Chen X, Lin Y, Conway EM, Pikarsky E, Wang H, Pan G, Ji Y, Wang HY, Hui L. Hepatocellular carcinoma repression by TNFa-mediated synergistic lethal effect of mitosis defect-induced senescence and cell death sensitization. Hepatology. 2016 10; 64(4):1105-20. View in: PubMed

  51. Li H, Zhu Y, Burnside ES, Drukker K, Hoadley KA, Fan C, Conzen SD, Whitman GJ, Sutton EJ, Net JM, Ganott M, Huang E, Morris EA, Perou CM, Ji Y, Giger ML. MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays. Radiology. 2016 Nov; 281(2):382-391. View in: PubMed

  52. Luo R, Zhao J, Tan Y, Sujie A, Zeng H, Ji Y. [Hepatic angiomyolipoma: a clinicopathologic features and prognosis analysis of 182 cases]. Zhonghua Bing Li Xue Za Zhi. 2016 Mar; 45(3):165-9. View in: PubMed

  53. Guo W, Li H, Zhu Y, Lan L, Yang S, Drukker K, Morris E, Burnside E, Whitman G, Giger ML, Ji Y. Prediction of clinical phenotypes in invasive breast carcinomas from the integration of radiomics and genomics data. J Med Imaging (Bellingham). 2015 10; 2(4):041007. View in: PubMed

  54. Chen T, Zhou PH, Chu Y, Zhang YQ, Chen WF, Ji Y, Yao LQ, Xu MD. Long-term Outcomes of Submucosal Tunneling Endoscopic Resection for Upper Gastrointestinal Submucosal Tumors. Ann Surg. 2016 Jan 19. View in: PubMed

  55. Sengupta S, Zhou T, Müeller P, Ji Y. A BAYESIAN NONPARAMETRIC MODEL FOR RECONSTRUCTING TUMOR SUBCLONES BASED ON MUTATION PAIRS. Pac Symp Biocomput. 2016; 21:393-404. View in: PubMed

  56. Xu Y, Zheng X, Yuan Y, Estecio MR, Issa JP, Ji Y, Liang S. A Bayesian Model for SNP Discovery Based on Next-Generation Sequencing Data. IEEE Int Workshop Genomic Signal Process Stat. 2012 Dec; 2012:42-45. View in: PubMed

  57. Ge X, Wang H, Xu C, Liu Y, Ji Y, Tan Y, Hou Y, Qin J. Heterogeneous Her2/Neu expression in gastric and gastroesophageal cancer-reply. Hum Pathol. 2016 Feb; 48:174-5. View in: PubMed

  58. Ma Y, Ji Y, Huang G, Ling K, Zhang X, Xu F. Bioprinting 3D cell-laden hydrogel microarray for screening human periodontal ligament stem cell response to extracellular matrix. Biofabrication. 2015 Dec 22; 7(4):044105. View in: PubMed

  59. Zhu Y, Li H, Guo W, Drukker K, Lan L, Giger ML, Ji Y. Deciphering Genomic Underpinnings of Quantitative MRI-based Radiomic Phenotypes of Invasive Breast Carcinoma. Sci Rep. 2015 Dec 07; 5:17787. View in: PubMed

  60. Xu Y, Zhu Y, Müller P, Mitra R, Ji Y. Characterizing Cancer-Specific Networks by Integrating TCGA Data. Cancer Inform. 2014; 13(Suppl 2):125-31. View in: PubMed

  61. Burnside ES, Drukker K, Li H, Bonaccio E, Zuley M, Ganott M, Net JM, Sutton EJ, Brandt KR, Whitman GJ, Conzen SD, Lan L, Ji Y, Zhu Y, Jaffe CC, Huang EP, Freymann JB, Kirby JS, Morris EA, Giger ML. Using computer-extracted image phenotypes from tumors on breast magnetic resonance imaging to predict breast cancer pathologic stage. Cancer. 2016 Mar 01; 122(5):748-57. View in: PubMed

  62. Lee J, Thall PF, Ji Y, Müller P. A decision-theoretic phase I-II design for ordinal outcomes in two cycles. Biostatistics. 2016 Apr; 17(2):304-19. View in: PubMed

  63. Guo W, Ni Y, Ji Y. TEAMS: Toxicity- and Efficacy-based Dose Insertion Design with Adaptive Model Selection for Phase I/II Dose-Escalation Trials in Oncology. Stat Biosci. 2015 Oct; 7(2):432-459. View in: PubMed

  64. Lee J, Müller P, Zhu Y, Ji Y. A Nonparametric Bayesian Model for Nested Clustering. Methods Mol Biol. 2016; 1362:129-41. View in: PubMed

  65. Zhang J, Fan S, Mao Y, Ji Y, Jin L, Lu J, Chen X. Cardiovascular protective effect of polysaccharide from Ophiopogon japonicus in diabetic rats. Int J Biol Macromol. 2016 Jan; 82:505-13. View in: PubMed

  66. Sengupta S, Gulukota K, Zhu Y, Ober C, Naughton K, Wentworth-Sheilds W, Ji Y. Ultra-fast local-haplotype variant calling using paired-end DNA-sequencing data reveals somatic mosaicism in tumor and normal blood samples. Nucleic Acids Res. 2016 Feb 18; 44(3):e25. View in: PubMed

  67. Yang S, Wang SJ, Ji Y. An integrated dose-finding tool for phase I trials in oncology. Contemp Clin Trials. 2015 Nov; 45(Pt B):426-434. View in: PubMed

  68. Lee J, Thall PF, Ji Y, Müller P. Bayesian Dose-Finding in Two Treatment Cycles Based on the Joint Utility of Efficacy and Toxicity. J Am Stat Assoc. 2015 Jun 01; 110(510):711-722. View in: PubMed

  69. Xu Y, Zheng X, Yuan Y, Estecio MR, Issa JP, Qiu P, Ji Y, Liang S. BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data. IEEE/ACM Trans Comput Biol Bioinform. 2014 Nov-Dec; 11(6):1038-44. View in: PubMed

  70. Yang LX, Gao Q, Shi JY, Wang ZC, Zhang Y, Gao PT, Wang XY, Shi YH, Ke AW, Shi GM, Cai JB, Liu WR, Duan M, Zhao YJ, Ji Y, Gao DM, Zhu K, Zhou J, Qiu SJ, Cao Y, Tang QQ, Fan J. Mitogen-activated protein kinase kinase kinase 4 deficiency in intrahepatic cholangiocarcinoma leads to invasive growth and epithelial-mesenchymal transition. Hepatology. 2015 Dec; 62(6):1804-16. View in: PubMed

  71. Sheng RF, Zeng MS, Ji Y, Yang L, Chen CZ, Rao SX. MR features of small hepatocellular carcinoma in normal, fibrotic, and cirrhotic livers: a comparative study. Abdom Imaging. 2015 Oct; 40(8):3062-9. View in: PubMed

  72. Chen T, Yao LQ, Xu MD, Zhang YQ, Chen WF, Shi Q, Cai SL, Chen YY, Xie YH, Ji Y, Chen SY, Zhou PH, Zhong YS. Efficacy and Safety of Endoscopic Submucosal Dissection for Colorectal Carcinoids. Clin Gastroenterol Hepatol. 2016 Apr; 14(4):575-81. View in: PubMed

  73. Xu Y, Lee J, Yuan Y, Mitra R, Liang S, Müller P, Ji Y. Nonparametric Bayesian Bi-Clustering for Next Generation Sequencing Count Data. Bayesian Anal. 2013 Dec; 8(4):759-780. View in: PubMed

  74. Mitra R, Müller P, Ji Y. Propriety conditions for the Bayesian autologistic model - Inference for histone modifications. J Stat Theory Pract. 2013; 7(2):248-258. View in: PubMed

  75. Mitra R, Müller P, Ji Y, Zhu Y, Mills G, Lu Y. A Bayesian hierarchical model for inference across related reverse phase protein arrays experiments. J Appl Stat. 2014; 41(11):2483-2492. View in: PubMed

  76. Telesca D, Müller P, Kornblau SM, Suchard MA, Ji Y. Modeling Protein Expression and Protein Signaling Pathways. J Am Stat Assoc. 2011; 107(500):1372-1384. View in: PubMed

  77. Lee J, Ji Y, Liang S, Cai G, Müller P. Bayesian Hierarchical Model for Differential Gene Expression Using RNA-seq Data. Stat Biosci. 2015 May 01; 7(1):48-67. View in: PubMed

  78. Xu Y, Müller P, Yuan Y, Gulukota K, Ji Y. MAD Bayes for Tumor Heterogeneity - Feature Allocation with Exponential Family Sampling. J Am Stat Assoc. 2015 Mar 01; 110(510):503-514. View in: PubMed

  79. Xu X, Han X, Liu L, Ji Y, Li J, Lou W. Clinical Analysis and Comprehensive Treatment of Nonfunctional Pancreatic Neuroendocrine Tumor With Liver Metastases: A Retrospective Single-Center Study. Pancreas. 2015 Aug; 44(6):995-6. View in: PubMed

  80. Qian Y, Zeng ZC, Ji Y, Xiao YP. Microinvasion of liver metastases from colorectal cancer: predictive factors and application for determining clinical target volume. Radiat Oncol. 2015 Jun 04; 10:125. View in: PubMed

  81. Huang J, Luo RK, Du M, Zeng HY, Chen LL, Ji Y. Clear cell sarcoma of the pancreas: a case report and review of literature. Int J Clin Exp Pathol. 2015; 8(2):2171-5. View in: PubMed

  82. Zhu Y, Xu Y, Helseth DL, Gulukota K, Yang S, Pesce LL, Mitra R, Müller P, Sengupta S, Guo W, Silverstein JC, Foster I, Parsad N, White KP, Ji Y. Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data. J Natl Cancer Inst. 2015 Aug; 107(8). View in: PubMed

  83. Sheng R, Xie Y, Zeng M, Ji Y, Rao S, Chen C. MR imaging of primary hepatic neuroendocrine neoplasm and metastatic hepatic neuroendocrine neoplasm: a comparative study. Radiol Med. 2015 Nov; 120(11):1012-20. View in: PubMed

  84. Ge X, Wang H, Zeng H, Jin X, Sujie A, Xu C, Liu Y, Huang J, Ji Y, Tan Y, Liu T, Hou Y, Qin J, Sun Y, Qin X. Clinical significance of assessing Her2/neu expression in gastric cancer with dual tumor tissue paraffin blocks. Hum Pathol. 2015 Jun; 46(6):850-7. View in: PubMed

  85. Xu Y, Zhang J, Yuan Y, Mitra R, Müller P, Ji Y. A Bayesian Graphical Model for Integrative Analysis of TCGA Data. IEEE Int Workshop Genomic Signal Process Stat. 2012 Dec; 2012:135-138. View in: PubMed

  86. Mitra R, Mueller P, Ji Y, Mills G, Lu Y. Sparse Bayesian Graphical Models for RPPA Time Course Data. IEEE Int Workshop Genomic Signal Process Stat. 2012 Dec; 2012:113-117. View in: PubMed

  87. Han X, Zhang C, Tang M, Xu X, Liu L, Ji Y, Pan B, Lou W. The value of serum chromogranin A as a predictor of tumor burden, therapeutic response, and nomogram-based survival in well-moderate nonfunctional pancreatic neuroendocrine tumors with liver metastases. Eur J Gastroenterol Hepatol. 2015 May; 27(5):527-35. View in: PubMed

  88. Ge XW, Zeng HY, Su-Jie A, Du M, Ji Y, Tan YS, Hou YY, Xu JF. Hepatocellular carcinoma with concomitant hepatic angiomyolipoma and cavernous hemangioma in one patient. World J Gastroenterol. 2015 Mar 21; 21(11):3414-9. View in: PubMed

  89. Gao SY, Gong YF, Sun QJ, Bai J, Wang L, Fan ZQ, Sun Y, Su YJ, Gang J, Ji YB. Screening antitumor bioactive fraction from Sauromatum giganteum (Engl.) Cusimano & Hett and sensitive cell lines with the serum pharmacology method and identification by UPLC-TOF-MS. Molecules. 2015 Mar 06; 20(3):4290-306. View in: PubMed

  90. Sengupta S, Wang J, Lee J, Müller P, Gulukota K, Banerjee A, Ji Y. Bayclone: Bayesian nonparametric inference of tumor subclones using NGS data. Pac Symp Biocomput. 2015; 467-78. View in: PubMed

  91. Mitra R, Müller P, Qiu P, Ji Y. Bayesian hierarchical models for protein networks in single-cell mass cytometry. Cancer Inform. 2014; 13(Suppl 4):79-89. View in: PubMed

  92. Yajima M, Telesca D, Ji Y, Müller P. Detecting differential patterns of interaction in molecular pathways. Biostatistics. 2015 Apr; 16(2):240-51. View in: PubMed

  93. Wu D, Tan M, Zhou M, Sun H, Ji Y, Chen L, Chen G, Zeng M. Liver computed tomographic perfusion in the assessment of microvascular invasion in patients with small hepatocellular carcinoma. Invest Radiol. 2015 Apr; 50(4):188-94. View in: PubMed

  94. Chen L, Tan Y, Zeng H, Hou Y, Xu J, Zhao J, Ji Y. [Dysplastic nodule of liver versus early hepatocellular carcinoma: a clinicopathologic and prognostic study]. Zhonghua Bing Li Xue Za Zhi. 2014 May; 43(5):301-6. View in: PubMed

  95. Zhu Y, Qiu P, Ji Y. TCGA-assembler: open-source software for retrieving and processing TCGA data. Nat Methods. 2014 Jun; 11(6):599-600. View in: PubMed

  96. Liu C, Karam R, Zhou Y, Su F, Ji Y, Li G, Xu G, Lu L, Wang C, Song M, Zhu J, Wang Y, Zhao Y, Foo WC, Zuo M, Valasek MA, Javle M, Wilkinson MF, Lu Y. The UPF1 RNA surveillance gene is commonly mutated in pancreatic adenosquamous carcinoma. Nat Med. 2014 Jun; 20(6):596-8. View in: PubMed

  97. Wang Y, Yu YY, Li W, Feng Y, Hou J, Ji Y, Sun YH, Shen KT, Shen ZB, Qin XY, Liu TS. A phase II trial of Xeloda and oxaliplatin (XELOX) neo-adjuvant chemotherapy followed by surgery for advanced gastric cancer patients with para-aortic lymph node metastasis. Cancer Chemother Pharmacol. 2014 Jun; 73(6):1155-61. View in: PubMed

  98. Yang B, Tan Y, Sun H, Fan J, Tang Z, Ji Y. Higher intratumor than peritumor expression of DUSP6/MKP-3 is associated with recurrence after curative resection of hepatocellular carcinoma. Chin Med J (Engl). 2014; 127(7):1211-7. View in: PubMed

  99. Yu Y, Dou XM, Wei B, Zha GW, Shang XJ, Wang L, Su D, Xu JX, Wang HY, Ni HQ, Sun BQ, Ji Y, Han XD, Niu ZC. Self-assembled quantum dot structures in a hexagonal nanowire for quantum photonics. Adv Mater. 2014 May; 26(17):2710-7, 2616. View in: PubMed

  100. Han X, Xu X, Jin D, Wang D, Ji Y, Lou W. Clinicopathological characteristics and prognosis-related factors of resectable pancreatic neuroendocrine tumors: a retrospective study of 104 cases in a single Chinese center. Pancreas. 2014 May; 43(4):526-31. View in: PubMed

  101. Sheng RF, Zeng MS, Rao SX, Ji Y, Chen LL. MRI of small intrahepatic mass-forming cholangiocarcinoma and atypical small hepatocellular carcinoma (=3 cm) with cirrhosis and chronic viral hepatitis: a comparative study. Clin Imaging. 2014 May-Jun; 38(3):265-72. View in: PubMed

  102. Cai C, Yuan Y, Ji Y. A Bayesian Dose-finding Design for Oncology Clinical Trials of Combinational Biological Agents. J R Stat Soc Ser C Appl Stat. 2014 01 01; 63(1):159-173. View in: PubMed

  103. Lee J, Müller P, Zhu Y, Ji Y. A Nonparametric Bayesian Model for Local Clustering with Application to Proteomics. J Am Stat Assoc. 2013 01 01; 108(503). View in: PubMed

  104. Pan J, Chen L, Fan J, Zhou J, Qin L, Tan Y, Ji Y, Huang X. Retrospective study of hepatocellular adenomas based on the phenotypic classification system: A report from China. Histol Histopathol. 2014 02; 29(2):243-9. View in: PubMed

  105. Liu YQ, Ji Y, Li XZ, Tian KL, Young CY, Lou HX, Yuan HQ. Retigeric acid B-induced mitophagy by oxidative stress attenuates cell death against prostate cancer cells in vitro. Acta Pharmacol Sin. 2013 Sep; 34(9):1183-91. View in: PubMed

  106. Trentini F, Ji Y, Iwamoto T, Qi Y, Pusztai L, Müller P. Bayesian mixture models for assessment of gene differential behaviour and prediction of pCR through the integration of copy number and gene expression data. PLoS One. 2013; 8(7):e68071. View in: PubMed

  107. Li D, Cen J, Chen X, Conway EM, Ji Y, Hui L. Hepatic loss of survivin impairs postnatal liver development and promotes expansion of hepatic progenitor cells in mice. Hepatology. 2013 Dec; 58(6):2109-21. View in: PubMed

  108. Mitra R, Müller P, Liang S, Xu Y, Ji Y. Toward breaking the histone code: bayesian graphical models for histone modifications. Circ Cardiovasc Genet. 2013 Aug; 6(4):419-26. View in: PubMed

  109. Liu Y, Ji Y, Qiu P. Identification of thresholds for dichotomizing DNA methylation data. EURASIP J Bioinform Syst Biol. 2013 Jun 06; 2013(1):8. View in: PubMed

  110. Qi L, Cao JL, Hu Y, Yang JG, Ji Y, Huang J, Zhang Y, Sun DG, Xia HF, Ma X. The dynamics of polycomb group proteins in early embryonic nervous system in mouse and human. Int J Dev Neurosci. 2013 Nov; 31(7):487-95. View in: PubMed

  111. Han X, Zhao J, Ji Y, Xu X, Lou W. Expression of CK19 and KIT in resectable pancreatic neuroendocrine tumors. Tumour Biol. 2013 Oct; 34(5):2881-9. View in: PubMed

  112. Han X, Ji Y, Zhao J, Xu X, Lou W. Expression of PTEN and mTOR in pancreatic neuroendocrine tumors. Tumour Biol. 2013 Oct; 34(5):2871-9. View in: PubMed

  113. Ji Y, Wang SJ. Modified toxicity probability interval design: a safer and more reliable method than the 3 + 3 design for practical phase I trials. J Clin Oncol. 2013 May 10; 31(14):1785-91. View in: PubMed

  114. Chen JW, Lü T, Liu HB, Tong SX, Ai ZL, Suo T, Ji Y. A solitary fibrous tumor in the pancreas. Chin Med J (Engl). 2013 Apr; 126(7):1388-9. View in: PubMed

  115. Huang C, Wang Y, Liu S, Ding G, Liu W, Zhou J, Kuang M, Ji Y, Kondo T, Fan J. Quantitative proteomic analysis identified paraoxonase 1 as a novel serum biomarker for microvascular invasion in hepatocellular carcinoma. J Proteome Res. 2013 Apr 05; 12(4):1838-46. View in: PubMed

  116. Ji Y, Mitra R, Quintana F, Jara A, Mueller P, Liu P, Lu Y, Liang S. BM-BC: a Bayesian method of base calling for Solexa sequence data. BMC Bioinformatics. 2012; 13 Suppl 13:S6. View in: PubMed

  117. Cai G, Li H, Lu Y, Huang X, Lee J, Müller P, Ji Y, Liang S. Accuracy of RNA-Seq and its dependence on sequencing depth. BMC Bioinformatics. 2012; 13 Suppl 13:S5. View in: PubMed

  118. Xu C, Liu YL, Huang J, He DM, Hou YY, Ji Y, Hou J, Lu SH, Xu JF, Hu Q, Shi Y, Zhao LJ, Tan YS. [Detection of KRAS gene mutation and its clinical significance in colorectal adenocarcinoma]. Zhonghua Bing Li Xue Za Zhi. 2012 Oct; 41(10):667-70. View in: PubMed

  119. Yuan Y, Norris C, Xu Y, Tsui KW, Ji Y, Liang H. BM-Map: an efficient software package for accurately allocating multireads of RNA-sequencing data. BMC Genomics. 2012; 13 Suppl 8:S9. View in: PubMed

  120. Yao XZ, Yun H, Zeng MS, Wang H, Sun F, Rao SX, Ji Y. Evaluation of ADC measurements among solid pancreatic masses by respiratory-triggered diffusion-weighted MR imaging with inversion-recovery fat-suppression technique at 3.0T. Magn Reson Imaging. 2013 May; 31(4):524-8. View in: PubMed

  121. Wang X, He H, Zhang H, Chen W, Ji Y, Tang Z, Fang Y, Wang C, Liu F, Shen Z, Qin J, Zhu Y, Liu H, Xu J, Gu J, Qin X, Sun Y. Clinical and prognostic implications of ß1, 6-N-acetylglucosaminyltransferase V in patients with gastric cancer. Cancer Sci. 2013 Feb; 104(2):185-93. View in: PubMed

  122. Li H, Su X, Gallegos J, Lu Y, Ji Y, Molldrem JJ, Liang S. dsPIG: a tool to predict imprinted genes from the deep sequencing of whole transcriptomes. BMC Bioinformatics. 2012 Oct 19; 13:271. View in: PubMed

  123. Min L, Ji Y, Bakiri L, Qiu Z, Cen J, Chen X, Chen L, Scheuch H, Zheng H, Qin L, Zatloukal K, Hui L, Wagner EF. Liver cancer initiation is controlled by AP-1 through SIRT6-dependent inhibition of survivin. Nat Cell Biol. 2012 Nov; 14(11):1203-11. View in: PubMed

  124. Wang LR, Zhou JM, Zhao YM, He HW, Chai ZT, Wang M, Ji Y, Chen Y, Liu C, Sun HC, Wu WZ, Ye QH, Zhou J, Fan J, Tang ZY, Wang L. Clinical experience with primary hepatic epithelioid hemangioendothelioma: retrospective study of 33 patients. World J Surg. 2012 Nov; 36(11):2677-83. View in: PubMed

  125. Li RK, Zeng MS, Rao SX, Qiang JW, Dai YM, Ji Y, Chen CZ, Renate J. Using a 2D multibreath-hold susceptibility-weighted imaging to visualize intratumoral hemorrhage of hepatocellular carcinoma at 3T MRI: correlation with pathology. J Magn Reson Imaging. 2012 Oct; 36(4):900-6. View in: PubMed

  126. Yao X, Zeng M, Wang H, Sun F, Rao S, Ji Y. Evaluation of pancreatic cancer by multiple breath-hold dynamic contrast-enhanced magnetic resonance imaging at 3.0T. Eur J Radiol. 2012 Aug; 81(8):e917-22. View in: PubMed

  127. Zhao J, Yang B, Xu C, Zhang WS, Ji Y, Chen LL, Tan YS, Zeng HY, Zhu XZ. [Study on clinicopathologic grading system and prognosis of primary hepatic neuroendocrine neoplasms]. Zhonghua Bing Li Xue Za Zhi. 2012 Feb; 41(2):102-6. View in: PubMed

  128. Nieto-Barajas LE, Müller P, Ji Y, Lu Y, Mills GB. A time-series DDP for functional proteomics profiles. Biometrics. 2012 Sep; 68(3):859-68. View in: PubMed

  129. Younes A, Oki Y, Bociek RG, Kuruvilla J, Fanale M, Neelapu S, Copeland A, Buglio D, Galal A, Besterman J, Li Z, Drouin M, Patterson T, Ward MR, Paulus JK, Ji Y, Medeiros LJ, Martell RE. Mocetinostat for relapsed classical Hodgkin's lymphoma: an open-label, single-arm, phase 2 trial. Lancet Oncol. 2011 Dec; 12(13):1222-8. View in: PubMed

  130. Zhang C, Guo W, Wu J, Song B, Zhang C, Dai Q, Pan B, Ji Y, Guo J. Differential high-resolution melting analysis for the detection of K-ras codons 12 and 13 mutations in pancreatic cancer. Pancreas. 2011 Nov; 40(8):1283-8. View in: PubMed

  131. Fridley BL, Batzler A, Li L, Li F, Matimba A, Jenkins GD, Ji Y, Wang L, Weinshilboum RM. Gene set analysis of purine and pyrimidine antimetabolites cancer therapies. Pharmacogenet Genomics. 2011 Nov; 21(11):701-12. View in: PubMed

  132. Lee J, Ji Y, Liang S, Cai G, Müller P. On differential gene expression using RNA-Seq data. Cancer Inform. 2011; 10:205-15. View in: PubMed

  133. Rao SX, Zeng MS, Cheng WZ, Yao XZ, Jin DY, Ji Y. Small solid tumors (PubMed

  134. Jóna A, Khaskhely N, Buglio D, Shafer JA, Derenzini E, Bollard CM, Medeiros LJ, Illés A, Ji Y, Younes A. The histone deacetylase inhibitor entinostat (SNDX-275) induces apoptosis in Hodgkin lymphoma cells and synergizes with Bcl-2 family inhibitors. Exp Hematol. 2011 Oct; 39(10):1007-1017.e1. View in: PubMed

  135. Chen B, Zeng ZC, Wang GM, Zhang L, Lin ZM, Sun LA, Zhu TY, Wu LL, Zhang JY, Ji Y. Radiotherapy may improve overall survival of patients with T3/T4 transitional cell carcinoma of the renal pelvis or ureter and delay bladder tumour relapse. BMC Cancer. 2011 Jul 14; 11:297. View in: PubMed

  136. Zhao YF, Wang CR, Wu YM, Ma SL, Ji Y, Lu YJ. P21 (waf1/cip1) is required for non-small cell lung cancer sensitive to Gefitinib treatment. Biomed Pharmacother. 2011 Jun; 65(3):151-6. View in: PubMed

  137. Shi DW, Zhang J, Jiang HN, Tong CY, Gu GR, Ji Y, Summah H, Qu JM. LPS pretreatment ameliorates multiple organ injuries and improves survival in a murine model of polymicrobial sepsis. Inflamm Res. 2011 Sep; 60(9):841-9. View in: PubMed

  138. Ji Y, Xu Y, Zhang Q, Tsui KW, Yuan Y, Norris C, Liang S, Liang H. BM-map: Bayesian mapping of multireads for next-generation sequencing data. Biometrics. 2011 Dec; 67(4):1215-24. View in: PubMed

  139. Baladandayuthapani V, Ji Y, Talluri R, Nieto-Barajas LE, Morris JS. Bayesian Random Segmentation Models to Identify Shared Copy Number Aberrations for Array CGH Data. J Am Stat Assoc. 2010 12; 105(492):1358-1375. View in: PubMed

  140. Chen LL, Ji Y, Xu JF, Lu SH, Hou YY, Hou J, Sujie A, Zeng HY, Tan YS. [Focal nodular hyperplasia of liver: a clinicopathologic study of 238 patients]. Zhonghua Bing Li Xue Za Zhi. 2011 Jan; 40(1):17-22. View in: PubMed

  141. Zhang Y, Zhou P, Xu M, Chen W, Li Q, Ji Y, Yao L. Endoscopic diagnosis and treatment of gastric glomus tumors. Gastrointest Endosc. 2011 Feb; 73(2):371-5. View in: PubMed

  142. Hou J, Xu JF, Ji Y, Hou YY, Tan YS, Sujie A, Xu L, Shi DR. [Melanotic epithelioid clear cell tumor of kidney: report of three cases]. Zhonghua Bing Li Xue Za Zhi. 2010 Dec; 39(12):825-9. View in: PubMed

  143. Shi Y, Hou YY, Lu SH, Zhou Y, Xu JF, Ji Y, Hou J, Xu C, Liu YL, Tan YS, Zhu XZ. Clinical and pathological studies of borderline gastrointestinal stromal tumors. Chin Med J (Engl). 2010 Sep; 123(18):2514-20. View in: PubMed

  144. Ji Y, Liu P, Li Y, Bekele BN. A modified toxicity probability interval method for dose-finding trials. Clin Trials. 2010 Dec; 7(6):653-63. View in: PubMed

  145. Zhou X, Teegala S, Huen A, Ji Y, Fayad L, Hagemeister FB, Gladish G, Vadhan-Raj S. Incidence and risk factors of venous thromboembolic events in lymphoma. Am J Med. 2010 Oct; 123(10):935-41. View in: PubMed

  146. Guo YF, Liu XW, Xu BC, Zhu YM, Wang YL, Zhao FF, Wang DY, Zhao YL, Ji YB, Wang QJ. Analysis of a large-scale screening of mitochondrial DNA m.1555A>G mutation in 2417 deaf-mute students in northwest of China. Genet Test Mol Biomarkers. 2010 Aug; 14(4):527-31. View in: PubMed

  147. Xu PJ, Yan FH, Wang JH, Shan Y, Ji Y, Chen CZ. Contribution of diffusion-weighted magnetic resonance imaging in the characterization of hepatocellular carcinomas and dysplastic nodules in cirrhotic liver. J Comput Assist Tomogr. 2010 Jul; 34(4):506-12. View in: PubMed

  148. Niu GM, Ji Y, Jin DY, Hou J, Lou WH. [Clinical implication of BRSK2 expression in pancreatic ductal adenocarcinoma]. Zhonghua Yi Xue Za Zhi. 2010 Apr 27; 90(16):1084-8. View in: PubMed

  149. Guo YF, Wang YL, Xu BC, Liu XW, Zhu YM, Zhao FF, Ji YB, Zhou Y, Li JQ, Li Q, Wang DY, Wang QJ. Identification of two novel mutations, c.232T>C and c.2006A>T, in SLC26A4 in a Chinese family associated with enlarged vestibular aqueduct. Int J Pediatr Otorhinolaryngol. 2010 Jul; 74(7):831-5. View in: PubMed

  150. Yang XR, Xu Y, Yu B, Zhou J, Qiu SJ, Shi GM, Zhang BH, Wu WZ, Shi YH, Wu B, Yang GH, Ji Y, Fan J. High expression levels of putative hepatic stem/progenitor cell biomarkers related to tumour angiogenesis and poor prognosis of hepatocellular carcinoma. Gut. 2010 Jul; 59(7):953-62. View in: PubMed

  151. Lin J, Ji Y. CT and MRI diagnosis of hepatic epithelioid hemangioendothelioma. Hepatobiliary Pancreat Dis Int. 2010 Apr; 9(2):154-8. View in: PubMed

  152. Zhou PH, Yao LQ, Qin XY, Xu MD, Zhong YS, Chen WF, Ma LL, Zhang YQ, Qin WZ, Cai MY, Ji Y. Advantages of endoscopic submucosal dissection with needle-knife over endoscopic mucosal resection for small rectal carcinoid tumors: a retrospective study. Surg Endosc. 2010 Oct; 24(10):2607-12. View in: PubMed

  153. Hou JZ, Zeng ZC, Sun J, Ji Y. Conformal radiotherapy for squamous cell carcinoma of gallbladder: a case report. Case Rep Med. 2010; 2010:645172. View in: PubMed

  154. Cao DX, Wang QG, Ji Y, Tan YS, Yang ZA, Zhang B, Zhou ML, Jiang Y, Han YS, Wu GH, Yan FH. Diagnostic methods for initial evaluation of primary gastrointestinal stromal tumors. Saudi Med J. 2010 Mar; 31(3):262-9. View in: PubMed

  155. Du SS, Qiang M, Zeng ZC, Ke AW, Ji Y, Zhang ZY, Zeng HY, Liu Z. Inactivation of kupffer cells by gadolinium chloride protects murine liver from radiation-induced apoptosis. Int J Radiat Oncol Biol Phys. 2010 Mar 15; 76(4):1225-34. View in: PubMed

  156. Yao X, Ji Y, Zeng M, Rao S, Yang B. Solid pseudopapillary tumor of the pancreas: cross-sectional imaging and pathologic correlation. Pancreas. 2010 May; 39(4):486-91. View in: PubMed

  157. Zhou ML, Yan FH, Xu PJ, Chen CZ, Shen JZ, Li RC, Ji Y, Shi JY. [Comparative study on clinical and pathological changes of liver fibrosis with diffusion-weighted imaging]. Zhonghua Yi Xue Za Zhi. 2009 Jul 07; 89(25):1757-61. View in: PubMed

  158. Xu PJ, Shan Y, Yan FH, Ji Y, Ding Y, Zhou ML. Epithelioid angiomyolipoma of the liver: cross-sectional imaging findings of 10 immunohistochemically-verified cases. World J Gastroenterol. 2009 Sep 28; 15(36):4576-81. View in: PubMed

  159. Guo J, Wang W, Liao P, Lou W, Ji Y, Zhang C, Wu J, Zhang S. Identification of serum biomarkers for pancreatic adenocarcinoma by proteomic analysis. Cancer Sci. 2009 Dec; 100(12):2292-301. View in: PubMed

  160. Wang M, Oki Y, Pro B, Romaguera JE, Rodriguez MA, Samaniego F, McLaughlin P, Hagemeister F, Neelapu S, Copeland A, Samuels BI, Loyer EM, Ji Y, Younes A. Phase II study of yttrium-90-ibritumomab tiuxetan in patients with relapsed or refractory mantle cell lymphoma. J Clin Oncol. 2009 Nov 01; 27(31):5213-8. View in: PubMed

  161. Bekele BN, Li Y, Ji Y. Risk-group-specific dose finding based on an average toxicity score. Biometrics. 2010 Jun; 66(2):541-8. View in: PubMed

  162. Xu PJ, Yan FH, Wang JH, Lin J, Ji Y, Chen CZ, Shen JZ, Li RC. [The value of breath-hold diffusion-weighted imaging in small hepatocellular carcinoma lesion (PubMed

  163. Berkova Z, Wang S, Wise JF, Maeng H, Ji Y, Samaniego F. Mechanism of Fas signaling regulation by human herpesvirus 8 K1 oncoprotein. J Natl Cancer Inst. 2009 Mar 18; 101(6):399-411. View in: PubMed

  164. Ji Y, Bekele BN. Adaptive randomization for multiarm comparative clinical trials based on joint efficacy/toxicity outcomes. Biometrics. 2009 Sep; 65(3):876-84. View in: PubMed

  165. Xu PJ, Yan FH, Wang JH, Lin J, Ji Y. Added value of breathhold diffusion-weighted MRI in detection of small hepatocellular carcinoma lesions compared with dynamic contrast-enhanced MRI alone using receiver operating characteristic curve analysis. J Magn Reson Imaging. 2009 Feb; 29(2):341-9. View in: PubMed

  166. Zhao SM, Zhu XZ, Ji Y, Hou J. [Expression of mucin glycoproteins and cytokeratins in intrahepatic cholangiocarcinoma]. Zhonghua Bing Li Xue Za Zhi. 2008 Nov; 37(11):749-53. View in: PubMed

  167. Wang DQ, Zeng MS, Shi X, Ji Y, Jin DY, Lou WH, Chen CZ, Li RC, Shen JZ. [Comparison of MRI manifestations and histopathologic findings in pancreatic head carcinoma in vivo ex vivo]. Zhonghua Zhong Liu Za Zhi. 2008 May; 30(5):347-51. View in: PubMed

  168. Ji YB, Gao SY. Arylamine N-acetyltransferases: a new inhibitor of apoptosis in HepG2 cells. J Zhejiang Univ Sci B. 2008 Sep; 9(9):701-6. View in: PubMed

  169. Li Y, Bekele BN, Ji Y, Cook JD. Dose--schedule finding in phase I/II clinical trials using a Bayesian isotonic transformation. Stat Med. 2008 Oct 30; 27(24):4895-913. View in: PubMed

  170. Yang XR, Xu Y, Shi GM, Fan J, Zhou J, Ji Y, Sun HC, Qiu SJ, Yu B, Gao Q, He YZ, Qin WZ, Chen RX, Yang GH, Wu B, Lu Q, Wu ZQ, Tang ZY. Cytokeratin 10 and cytokeratin 19: predictive markers for poor prognosis in hepatocellular carcinoma patients after curative resection. Clin Cancer Res. 2008 Jun 15; 14(12):3850-9. View in: PubMed

  171. Shi GM, Xu Y, Fan J, Zhou J, Yang XR, Qiu SJ, Liao Y, Wu WZ, Ji Y, Ke AW, Ding ZB, He YZ, Wu B, Yang GH, Qin WZ, Zhang W, Zhu J, Min ZH, Wu ZQ. Identification of side population cells in human hepatocellular carcinoma cell lines with stepwise metastatic potentials. J Cancer Res Clin Oncol. 2008 Nov; 134(11):1155-63. View in: PubMed

  172. Lu C, Ji Y, Shan F, Guo W, Ding J, Ge D. Solitary fibrous tumor of the pleura: an analysis of 13 cases. World J Surg. 2008 Aug; 32(8):1663-8. View in: PubMed

  173. Wang DQ, Zeng MS, Jin DY, Lou WH, Ji Y, Rao SX, Shi X, Chen CZ, Li RC. [MRI in the evaluation of peripancreatic vessel invasion and resectability of pancreatic carcinoma]. Zhonghua Zhong Liu Za Zhi. 2007 Nov; 29(11):846-9. View in: PubMed

  174. Sun M, Estrov Z, Ji Y, Coombes KR, Harris DH, Kurzrock R. Curcumin (diferuloylmethane) alters the expression profiles of microRNAs in human pancreatic cancer cells. Mol Cancer Ther. 2008 Mar; 7(3):464-73. View in: PubMed

  175. Zhou ML, Yan FH, Ye F, Xiong Z, Wang JH, Ji Y. [Images of primary hepatic angiosarcomas]. Zhonghua Gan Zang Bing Za Zhi. 2008 Feb; 16(2):136-7. View in: PubMed

  176. Ji Y, Lu Y, Mills GB. Bayesian models based on test statistics for multiple hypothesis testing problems. Bioinformatics. 2008 Apr 01; 24(7):943-9. View in: PubMed

  177. Zhang J, Ji Y, Zhang L. Extracting three-way gene interactions from microarray data. Bioinformatics. 2007 Nov 01; 23(21):2903-9. View in: PubMed

  178. Ji Y, Li Y, Nebiyou Bekele B. Dose-finding in phase I clinical trials based on toxicity probability intervals. Clin Trials. 2007; 4(3):235-44. View in: PubMed

  179. Wang DQ, Zeng MS, Jin DY, Lou WH, Ji Y, Rao SX, Chen CZ, Li RC. [Evaluation of 2D and 3D MRI imaging in the diagnosis of pancreatic carcinoma]. Zhonghua Zhong Liu Za Zhi. 2007 Mar; 29(3):216-20. View in: PubMed

  180. Ji Y, Zhu XZ, Lou WH, Wang DQ, Jin DY, Zeng MS, Zeng HY. [Clinicopathologic analysis of 92 cases of pancreatic cystic neoplasm]. Zhonghua Bing Li Xue Za Zhi. 2007 Mar; 36(3):160-5. View in: PubMed

  181. Wang DQ, Ji Y, Shi X, Rao SX, Ye T, Jin DY, Lou WH, Zeng MS. [CT diagnosis of intraductal papillary mucinous tumor of the pancreas]. Zhonghua Zhong Liu Za Zhi. 2006 Aug; 28(8):606-8. View in: PubMed

  182. Ji Y, Lou WH, Jin DY, Kuang TT, Zeng MS, Tan YS, Zeng HY, Sujie A, Zhu XZ. A series of 64 cases of pancreatic cystic neoplasia from an institutional study of China. World J Gastroenterol. 2006 Dec 07; 12(45):7380-7. View in: PubMed

  183. Yin G, Li Y, Ji Y. Bayesian dose-finding in phase I/II clinical trials using toxicity and efficacy odds ratios. Biometrics. 2006 Sep; 62(3):777-84. View in: PubMed

  184. Zhou ML, Yan FH, Xu PJ, Zhang LJ, Li QH, Ji Y. Mucinous cystadenoma of the appendix: CT findings. Chin Med J (Engl). 2006 Aug 05; 119(15):1300-3. View in: PubMed

  185. Lou WH, Wang DS, Ji Y, Xu XF, Kuang TT, Ni XL, Wu WC, Jin DY. [Clinical features and prognosis of intraductal papillary mucinous neoplasms of pancreas: analysis of 38 cases]. Zhonghua Yi Xue Za Zhi. 2006 Apr 11; 86(14):947-50. View in: PubMed

  186. Ji Y, Coombes K, Zhang J, Wen S, Mitchell J, Pusztai L, Symmans WF, Wang J. RefSeq refinements of UniGene-based gene matching improve the correlation of expression measurements between two microarray platforms. Appl Bioinformatics. 2006; 5(2):89-98. View in: PubMed

  187. Ji Y, Tan YS, Xu JF, Qi WD, Li XP, Su-Jie AS, Zhu XZ. Mucins in the diagnosis and differential diagnosis of pancreatic cystic neoplasms: report of 40 cases. Chin Med J (Engl). 2006 May 05; 119(9):765-8. View in: PubMed

  188. Ji Y, Tan YS, Zhu XZ, Zeng HY, Kuang TT, Jin DY. [Diagnosis and differential diagnosis of intraductal papillary mucinous neoplasm of pancreas]. Zhonghua Bing Li Xue Za Zhi. 2006 Feb; 35(2):77-81. View in: PubMed

  189. Kolonin MG, Sun J, Do KA, Vidal CI, Ji Y, Baggerly KA, Pasqualini R, Arap W. Synchronous selection of homing peptides for multiple tissues by in vivo phage display. FASEB J. 2006 May; 20(7):979-81. View in: PubMed

  190. Ji Y, Xu JF, Kuang TT, Zhou YN, Lu SH, Tan YS. Mucin profile of the pancreatic mucinous cystic neoplasms. Chin Med J (Engl). 2006 Feb 20; 119(4):328-30. View in: PubMed

  191. Ji Y, Fan J, Xu Y, Zhou J, Zeng HY, Tan YS. Solitary fibrous tumor of the liver. Hepatobiliary Pancreat Dis Int. 2006 Feb; 5(1):151-3. View in: PubMed

  192. Ji Y, Kuang TT, Tan YS, Chen Y, Zeng HY, Jin DY. Pancreatic primary lymphoma: a case report and review of the literature. Hepatobiliary Pancreat Dis Int. 2005 Nov; 4(4):622-6. View in: PubMed

  193. Li WL, Yang YN, Ji YB, Yu L, Fan YQ. [Biodegradation of butylbenzyl phthalate by acclimated activated sludge]. Huan Jing Ke Xue. 2005 Jul; 26(4):156-9. View in: PubMed

  194. Twigger SN, Pasko D, Nie J, Shimoyama M, Bromberg S, Campbell D, Chen J, dela Cruz N, Fan C, Foote C, Harris G, Hickmann B, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nigam R, Petri V, Reilly D, Ruotti V, Schauberger E, Seiler K, Slyper R, Smith J, Wang W, Wu W, Zhao L, Zuniga-Meyer A, Tonellato PJ, Kwitek AE, Jacob HJ. Tools and strategies for physiological genomics: the Rat Genome Database. Physiol Genomics. 2005 Oct 17; 23(2):246-56. View in: PubMed

  195. Ji Y, Wu C, Liu P, Wang J, Coombes KR. Applications of beta-mixture models in bioinformatics. Bioinformatics. 2005 May 01; 21(9):2118-22. View in: PubMed

  196. de la Cruz N, Bromberg S, Pasko D, Shimoyama M, Twigger S, Chen J, Chen CF, Fan C, Foote C, Gopinath GR, Harris G, Hughes A, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nie J, Nigam R, Petri V, Reilly D, Wang W, Wu W, Zuniga-Meyer A, Zhao L, Kwitek A, Tonellato P, Jacob H. The Rat Genome Database (RGD): developments towards a phenome database. Nucleic Acids Res. 2005 Jan 01; 33(Database issue):D485-91. View in: PubMed

  197. Ji Y, Tsui KW, Kim K. A novel means of using gene clusters in a two-step empirical Bayes method for predicting classes of samples. Bioinformatics. 2005 Apr 01; 21(7):1055-61. View in: PubMed

  198. Li WL, Ji YB, Yang YN, Yang B. [Reproductive toxicity and functional mechanism of the environmental hormone butylbenzyl phthalate]. Huan Jing Ke Xue. 2004 Jan; 25(1):1-6. View in: PubMed

  199. Xu PJ, Yan FH, Cheng WZ, Ling ZQ, Chen CZ, Fan J, Ji Y. Evaluation of MRI in the diagnosis of hepatic tuberculoma. Chin Med J (Engl). 2004 May; 117(5):782-4. View in: PubMed

  200. Zhou J, Tang ZY, Fan J, Wu ZQ, Ji Y, Xiao YS, Shi YH, Li XM, Sun QM, Liu YK, Ye SL. Capecitabine inhibits postoperative recurrence and metastasis after liver cancer resection in nude mice with relation to the expression of platelet-derived endothelial cell growth factor. Clin Cancer Res. 2003 Dec 01; 9(16 Pt 1):6030-7. View in: PubMed

  201. Wu Q, Ji Y, Zhang MQ, Chen YQ, Chen F, Shi DL, Zheng ZH, Huang YJ, Su WJ. Role of tumor metastasis suppressor gene KAI1 in digestive tract carcinomas and cancer cells. Cell Tissue Res. 2003 Nov; 314(2):237-49. View in: PubMed

  202. Qin LX, Tang ZY, Ma ZC, Wu ZQ, Zhou XD, Ye QH, Ji Y, Huang LW, Jia HL, Sun HC, Wang L. P53 immunohistochemical scoring: an independent prognostic marker for patients after hepatocellular carcinoma resection. World J Gastroenterol. 2002 Jun; 8(3):459-63. View in: PubMed